
Open Software for Proteomics
The alphapept ecosystem is an integrated ecoysystem of state-of-the-art scientific software tools designed for proteomics research and mass spectrometry data analysis. Our mission is to provide researchers with powerful, user-friendly, interoperable, and open-source software that advances the field of proteomics.
Key Packages
alphaDIA
Search engine for data-independent acquisition (DIA) experiments
alphapeptdeep
Modular Deep learning for shotgun proteomics
directLFQ
Label-free quantification for accurate protein abundance measurements
alphaquant
Accurate and sensitive peptide and protein quantification with trees
Mission and Values
The alphapept ecosystem is founded on the following principles:
- Openness: Fully open-source, transparent, and developed in collaboration with the community.
- Scientific Rigor: Committed to delivering robust, state-of-the-art tools for proteomics data analysis.
- Interoperability: Designed to integrate seamlessly with the broader scientific software landscape.
- Community Focus: Developed by researchers, for researchers—driven by shared knowledge and collaboration.
Getting Started
Explore our ecosystem to find the right tools for your research, learn about our mission, or stay updated with the latest developments in our news section.
Contribute
Ready to contribute? Check out our contributors page to see how you can get involved in the alphapept ecosystem.